Comparative genomic and phylogenetic analyses of gammaproteobacterial glg genes traced the origin of the Escherichia coli glycogen glgBXCAP pperon to the last common ancestor of the sister orders enterobacteriales and pasteurellales

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dc.citation.titlePublic Library of Science
dc.creatorAlmagro, Goizeder
dc.creatorViale, Alejandro M.
dc.creatorMontero, Manuel
dc.creatorRahimpour, Mehdi
dc.creatorMuñoz, Francisco José
dc.creatorBaroja Fernández, Edurne
dc.creatorBahaji, Abdellatif
dc.creatorZúñiga, Manuel
dc.creatorGonzález Candelas, Fernando
dc.creatorPozueta Romero, Javier
dc.date.accessioned2024-05-20T15:06:54Z
dc.date.available2024-05-20T15:06:54Z
dc.date.issued2015-01-21
dc.description.abstractProduction of branched α-glucan, glycogen-like polymers is widely spread in the Bacteria domain. The glycogen pathway of synthesis and degradation has been fairly well characterized in the model enterobacterial species Escherichia coli (order Enterobacteriales, class Gammaproteobacteria), in which the cognate genes (branching enzyme glgB, debranching enzyme glgX, ADP-glucose pyrophosphorylase glgC, glycogen synthase glgA, and glycogen phosphorylase glgP) are clustered in a glgBXCAP operon arrangement. However, the evolutionary origin of this particular arrangement and of its constituent genes is unknown. Here, by using 265 complete gammaproteobacterial genomes we have carried out a comparative analysis of the presence, copy number and arrangement of glg genes in all lineages of the Gammaproteobacteria. These analyses revealed large variations in glg gene presence, copy number and arrangements among different gammaproteobacterial lineages. However, the glgBXCAP arrangement was remarkably conserved in all glg-possessing species of the orders Enterobacteriales and Pasteurellales (the E/P group). Subsequent phylogenetic analyses of glg genes present in the Gammaproteobacteria and in other main bacterial groups indicated that glg genes have undergone a complex evolutionary history in which horizontal gene transfer may have played an important role. These analyses also revealed that the E/P glgBXCAP genes (a) share a common evolutionary origin, (b) were vertically transmitted within the E/P group, and (c) are closely related to glg genes of some phylogenetically distant betaproteobacterial species. The overall data allowed tracing the origin of the E. coli glgBXCAP operon to the last common ancestor of the E/P group, and also to uncover a likely glgBXCAP transfer event from the E/P group to particular lineages of the Betaproteobacteria.
dc.description.filFil: Almagro, Goizeder. Universidad Pública de Navarra. Consejo Superior de Investigaciones Científicas. Instituto de Agrobiotecnología; Spain.
dc.description.filFil: Viale, Alejandro M. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Biología Molecular y Celular de Rosario. Departamento de Microbiología (CONICET-IBR); Argentina.
dc.description.filFil: Montero, Manuel. Universidad Pública de Navarra. Consejo Superior de Investigaciones Científicas. Instituto de Agrobiotecnología; Spain.
dc.description.filFil: Rahimpour, Mehdi. Universidad Pública de Navarra. Consejo Superior de Investigaciones Científicas. Instituto de Agrobiotecnología; Spain.
dc.description.filFil: Muñoz, Francisco José. Universidad Pública de Navarra. Consejo Superior de Investigaciones Científicas. Instituto de Agrobiotecnología; Spain.
dc.description.filFil: Baroja Fernández, Edurne. Universidad Pública de Navarra. Consejo Superior de Investigaciones Científicas. Instituto de Agrobiotecnología; Spain.
dc.description.filFil: Bahaji, Abdellatif. Universidad Pública de Navarra. Consejo Superior de Investigaciones Científicas. Instituto de Agrobiotecnología; Spain.
dc.description.filFil: Zúñiga, Manuel. Consejo Superior de Investigaciones Científicas. Instituto de Agroquímica y Tecnología de Alimentos. Departamento Biotecnología de Alimentos; Spain.
dc.description.filFil: González Candelas, Fernando. Universidad de Valencia. Instituto Cavanilles de Biodiversidad y Biología Evolutiva. Unidad Mixta Genómica y Salud, FISABIO-Salud Pública; Spain.
dc.description.filFil: Pozueta Romero, Javier. Universidad Pública de Navarra. Consejo Superior de Investigaciones Científicas. Instituto de Agrobiotecnología; Spain.
dc.description.sponsorshipComisión Interministerial de Ciencia y Tecnología. Fondo Europeo de Desarrollo Regional: BIO2010-18239
dc.description.sponsorshipConsejo Superior de Investigaciones Científicas
dc.description.sponsorshipMinisterio de Ciencia e Innovación: BFU2011-24112
dc.description.sponsorshipPublic Universtity of Navarra. Institute of Agrobiotechnology
dc.format.extent1-30
dc.identifier.issn1932-6203
dc.identifier.urihttps://hdl.handle.net/2133/27071
dc.language.isoen
dc.publisherPublic Library of Science
dc.relation.publisherversionhttps://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0115516&type=printable
dc.relation.publisherversionhttps://doi.org/10.1371/journal.pone.0115516
dc.rightsopenAccess
dc.rights.holderAlmagro, Goizeder
dc.rights.holderViale, Alejandro M.
dc.rights.holderMontero, Manuel
dc.rights.holderRahimpour, Mehdi
dc.rights.holderMuñoz, Francisco José
dc.rights.holderBaroja-Fernández, Edurne
dc.rights.holderBahaji, Abdellatif
dc.rights.holderZúñiga, Manuel
dc.rights.holderGonzález Candelas, Fernando
dc.rights.holderPozueta-Romero, Javier
dc.rights.holderUniversidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas
dc.rights.textAttribution 4.0 Internationalen
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.subjectEscherichia
dc.subjectEvolution molecular
dc.subjectGlycogen
dc.subjectOperon
dc.subjectPasteurellaceae
dc.subjectPhylogeny
dc.titleComparative genomic and phylogenetic analyses of gammaproteobacterial glg genes traced the origin of the Escherichia coli glycogen glgBXCAP pperon to the last common ancestor of the sister orders enterobacteriales and pasteurellales
dc.typearticulo
dc.type.versionpublishedVersion

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